Schlotterbeck has impressed with his performances at Freiburg in the Bundesliga and Newcastle showed interest in signing him in January; Freiburg have been realistic on potentially losing him.
Newcastle have been tipped to rekindle their interest in the centre-back, while Tottenham have him on their list of defensive targets for the summer.
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However, both Premier League sides will miss out on Schlotterbeck as he is Dortmund bound.
According to German daily Bild, the 22-year-old is currently at Dortmund and is undergoing a medical with the Ruhr giants.
He has put pen to paper to a three-year deal at Dortmund, with an option to extend it further.
Dortmund will pay Freiburg an initial €20m for the defender, with a further €5m to come in bonus payments.
Schlotterbeck is being well rewarded for the switch and will earn around €4.5m per year at Dortmund.